If you’re someone who likes to keep their Windows 11 system organized, you’ve probably come across empty folders scattered across your files. While these folders don’t take up much space, they can clutter your directories and make your system look untidy.
While manually deleting them via File Explorer or scripting with Command Prompt/PowerShell works (as detailed in our previous guide), these methods can be time-consuming, especially for large drives or nested directories.
For a faster, more intuitive approach, Wise Duplicate Finder simplifies the process with automated scanning and filtering tools. Unlike manual methods, this software eliminates guesswork by pinpointing truly empty folders and allowing bulk deletion in seconds. This guide focuses on leveraging this tool to identify and remove empty folders effortlessly.
Step 1. Download and Install
First, download Wise Duplicate Finder from the official website. After installation, launch the program.
Step 2. Select Target Location
Choose the folder or directory where you want to search for empty folders. By clicking the file icon under the Home tab, you can select a specific drive, such as the Desktop or C drive. If you want to select folders more precisely then you can click on Add Folder and then find the folder you want to scan and click on Select Folder, note that you can select more than one folder, just repeat the above steps.

Step 3. Configure Settings
In the top-left section, set the Minimum and Maximum sizes of the folder, you can enter 0 bytes for both (this ensures that the scan is only for items with no content). Under the File type dropdown, choose All files to search across all folders. Make sure the Include empty folders option is checked.

Step 4. Scan for Empty Folders
After setting the parameters, click on the Scan button. The program will begin scanning the selected location for empty folders.

Step 5. Review and Delete
After the scan is complete, Wise Duplicate Finder will list all the empty folders found in the selected directory. Once you’ve reviewed the results, click the Delete Selected button to remove the empty folders from your system. A prompt will ask for confirmation. Review your selections one last time before proceeding.

Conclusion
Wise Duplicate Finder simplifies the process of eliminating empty folders without requiring technical commands or scripts. Its filtering capabilities and user-friendly design make it a valuable tool for maintaining an organized Windows 11 system. For alternative methods, check out our previous guide for more options.